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GenomAutomorphism
- GenomAutomorphism: An R package to compute the automorphisms between
DNA sequences represented as elements from an Abelian group.
Codon and DNA Base Algebraic Representation
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codon_coord()
- Codon coordinates on a given a given Abelian group representation.
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base_coord()
- Base coordinates on a given a given Abelian group representation.
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get_coord()
- DNA base/codon sequence and coordinates represented on a given
Abelian group.
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matrices()
- Get the Coordinate Representation from DNA Sequences on Specified
Abelian Group
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seqranges()
- Get DNA sequence Ranges and Coordinates representation on a given
Abelian Group
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automorphisms()
- Compute the Automorphisms of Mutational Events Between two Codon
Sequences Represented in a Given Abelian group.
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autZ5()
- Compute the Automorphisms of Mutational Events Between two Codon
Sequences Represented in Z5.
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autZ64()
- Compute the Automorphisms of Mutational Events Between two Codon
Sequences Represented in Z64.
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autZ125()
- Compute the Automorphisms of Mutational Events Between two Codon
Sequences Represented in Z125.
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aut3D()
- Compute the Automorphisms of Mutational Events Between two Codon
Sequences Represented in Z5^3.
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aln
- Simulated
DNAStringSet
class object
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autm
- Automorphisms between DNA Sequences from two COVID-19 genomes
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cyc_aln
- Multiple Sequence Alignment (MSA) of Primate Somatic Cytochrome C
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autm_3d
- Automorphisms between DNA Sequences from two COVID-19 genomes
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autm_z125
- Automorphisms between DNA Sequences from two COVID-19 genomes
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cyc_autm
- Automorphisms between DNA Sequences from Primate Cytochrome C Genes
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autby_coef
- Automorphisms between DNA Primate BRCA1 Genes Grouped by Coefficients
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covid_aln
- Pairwise Sequence Alignment (MSA) of COVID-19 genomes.
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covid_autm
- Automorphisms between DNA Sequences from two COVID-19 genomes
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brca1_aln
- Multiple Sequence Alignment (MSA) of Primate BRCA1 DNA repair genes.
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brca1_aln2
- Multiple Sequence Alignment (MSA) of Primate BRCA1 DNA repair genes.
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brca1_autm
- Automorphisms between DNA Sequences from Primate BRCA1 Genes
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brca1_autm2
- Automorphisms between DNA Sequences from Primate BRCA1 Genes
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aaindex2
- List of 94 Amino Acid Matrices from AAindex
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aaindex3
- Statistical protein contact potentials matrices from AAindex ver.9.2