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Multiple Sequence Alignment (MSA) of Primate BRCA1 DNA repair genes.

Source: R/data_brca1_aln2.R
brca1_aln2.Rd

This is a DNAMultipleAlignment carrying a MSA of BRCA1 DNA repair genes to be used in the examples provided for the package functions. The original file can be downloaded from GitHub at: https://bit.ly/3DimROD. This data set has 41 DNA sequences and it contains the previous 20 primate variants found in 'brca1_aln' data set plus 21 single mutation variants (SMV) from the human sequence NM_007298 transcript variant 4. The location of each SMV is given in the heading from each sequence.

Usage

data("brca1_aln2", package = "GenomAutomorphism")

Format

DNAMultipleAlignment class object.

See also

brca1_aln, brca1_autm2, cyc_aln, and covid_autm.

Author

Robersy Sanchez https://genomaths.com

Examples

data("brca1_aln2", package = "GenomAutomorphism")
brca1_aln2
#> DNAMultipleAlignment with 41 rows and 2283 columns
#>       aln                                                   names               
#>  [1] ATGGATTTATCTGCTCTTCGCGTTG...CCAGATCCCCCACAGCCACTACTGA NM_007298.3:20-22...
#>  [2] ATGGATTTATCTGCTCTTCGCGTTG...CCAGATCCCCCACAGCCACTACTGA U64805.1:1-2280_H...
#>  [3] ATGGATTTCTCTGCTCTTCGCGTTG...CCAGATCCCCCACAGCCACTACTGA NM_007298.3:20-22...
#>  [4] ATGGATTTGTCTGCTCTTCGCGTTG...CCAGATCCCCCACAGCCACTACTGA NM_007298.3:20-22...
#>  [5] ATGGATTTTTCTGCTCTTCGCGTTG...CCAGATCCCCCACAGCCACTACTGA NM_007298.3:20-22...
#>  [6] ATGGATTTTTCTGCTCTTCGGGTTG...CCAGATCCCCCACAGCCACTACTGA NM_007298.3:20-22...
#>  [7] ATGGATTTTTCTGCTCTTCGCTTTG...CCAGATCCCCCACAGCCACTACTGA NM_007298.3:20-22...
#>  [8] ATGGATTTTTCTGCTCTTCGCCTTG...CCAGATCCCCCACAGCCACTACTGA NM_007298.3:20-22...
#>  [9] ATGGATTTTTCTGCTCTTCGCATTG...CCAGATCCCCCACAGCCACTACTGA NM_007298.3:20-22...
#>  ... ...
#> [33] ATGGATTTATCTGCTCTTCGCGTTG...TCAGATCCCCCACAGCCACTACTGA XM_034941185.1:24...
#> [34] ATGGATTTATCTGCTCTTCGCGTTG...TCAGATCCCCCACAGCCACTACTGA XM_034941182.1:25...
#> [35] ATGGATTTATCTGCTGTTCGCGTTG...CCAGATCCCCCACAGCCACTACTGA XM_032163757.1:14...
#> [36] ATGGATTTATCTGCTGTTCGCGTTG...CCAGATCCCCCACAGCCACTACTGA XM_032163756.1:14...
#> [37] ATGGATTTATCTGCTGTTCGCGTTG...CCAGATCCCCCACAGCCACTACTGA XM_032163758.1:13...
#> [38] ATGGATTTATCTGCTCTTCGCGTTG...CCAGATCCCCCACAGCCACTACTGA XM_030923119.1:18...
#> [39] ATGGATTTATCTGCTCTTCGCGTTG...CCAGATCCCCCACAGCCACTACTGA XM_030923118.1:18...
#> [40] ATGGATTTACCTGCTGTTCGCGTTG...CCAGATCCCCCACAGCCACTACTGA XM_025363316.1:14...
#> [41] ATGGATTTATCTGCTGTTCGTGTTG...CCAGATCCCTCACAGCCACTACTGA XM_039475995.1:49...