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Multiple Sequence Alignment (MSA) of Primate BRCA1 DNA repair genes.

Source: R/data_brca1_aln.R
brca1_aln.Rd

This is a DNAMultipleAlignment carrying a MSA of BRCA1 DNA repair genes to be used in the examples provided for the package functions. The original file can be downloaded from GitHub at: https://bit.ly/3DimROD

Usage

data("brca1_aln", package = "GenomAutomorphism")

Format

DNAMultipleAlignment class object.

See also

brca1_aln2, brca1_autm, and covid_aln.

Examples

data("brca1_aln", package = "GenomAutomorphism")
brca1_aln
#> DNAMultipleAlignment with 20 rows and 2283 columns
#>       aln                                                   names               
#>  [1] ATGGATTTATCTGCTCTTCGCGTTG...CCAGATCCCCCACAGCCACTACTGA NM_007298.3:20-22...
#>  [2] ATGGATTTATCTGCTCTTCGCGTTG...CCAGATCCCCCACAGCCACTACTGA U64805.1:1-2280_H...
#>  [3] ATGGATTTATCTGCTCTTCGCGTTG...CCAGATCCCCCACAGCCACTACTGA XM_031011560.1:23...
#>  [4] ATGGATTTATCTGCTCTTCGCGTTG...CCAGATCCCCCACAGCCACTACTGA XM_031011561.1:23...
#>  [5] ATGGATTTATCTGCTCTTCGCGTTG...CCAGATCCCCCACAGCCACTACTGA XM_031011562.1:16...
#>  [6] ATGGATTTATCTGCTCTTCGCGTTG...TCAGATCCCCCACAGCCACTACTGA XM_009432101.3:27...
#>  [7] ATGGATTTATCTGCTCTTCGCGTTG...TCAGATCCCCCACAGCCACTACTGA XM_009432104.3:37...
#>  [8] ATGGATTTATCTGCTCTTCGCGTTG...TCAGATCCCCCACAGCCACTACTGA XM_016930487.2:37...
#>  [9] ATGGATTTATCTGCTCTTCGCGTTG...TCAGATCCCCCACAGCCACTACTGA XM_009432099.3:37...
#>  ... ...
#> [12] ATGGATTTATCTGCTCTTCGCGTTG...TCAGATCCCCCACAGCCACTACTGA XM_034941185.1:24...
#> [13] ATGGATTTATCTGCTCTTCGCGTTG...TCAGATCCCCCACAGCCACTACTGA XM_034941182.1:25...
#> [14] ATGGATTTATCTGCTGTTCGCGTTG...CCAGATCCCCCACAGCCACTACTGA XM_032163757.1:14...
#> [15] ATGGATTTATCTGCTGTTCGCGTTG...CCAGATCCCCCACAGCCACTACTGA XM_032163756.1:14...
#> [16] ATGGATTTATCTGCTGTTCGCGTTG...CCAGATCCCCCACAGCCACTACTGA XM_032163758.1:13...
#> [17] ATGGATTTATCTGCTCTTCGCGTTG...CCAGATCCCCCACAGCCACTACTGA XM_030923119.1:18...
#> [18] ATGGATTTATCTGCTCTTCGCGTTG...CCAGATCCCCCACAGCCACTACTGA XM_030923118.1:18...
#> [19] ATGGATTTACCTGCTGTTCGCGTTG...CCAGATCCCCCACAGCCACTACTGA XM_025363316.1:14...
#> [20] ATGGATTTATCTGCTGTTCGTGTTG...CCAGATCCCTCACAGCCACTACTGA XM_039475995.1:49...