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Pairwise Sequence Alignment (MSA) of COVID-19 genomes.

Source: R/data_covid_aln.R
covid_aln.Rd

This is a DNAMultipleAlignment carrying the pairwise sequence alignment of SARS coronavirus GZ02 (GenBank: AY390556.1: 265-13398_13398-21485) and Bat SARS-like coronavirus isolate bat-SL-CoVZC45 (GenBank: MG772933.1:265-1345513455-21542), complete genomes. The alignment is available at GitHub: https://github.com/genomaths/seqalignments/tree/master/COVID-19

Usage

data("covid_aln", package = "GenomAutomorphism")

Format

DNAMultipleAlignment class object.

See also

brca1_aln, brca1_autm2, cyc_aln and covid_aln.

Author

Robersy Sanchez https://genomaths.com

Examples

data("covid_aln", package = "GenomAutomorphism")
covid_aln
#> DNAMultipleAlignment with 2 rows and 29166 columns
#>      aln                                                    names               
#> [1] ATGGAGAGCCTTGTTCTTGGTGTCAA...TTCTGCTGATTCAACTCAGGCATAA lcl|AY390556.1_cd...
#> [2] ATGGAGAGCCTTGTTCTTGGTGTCAA...TTCTGCTGATTCAACTCAGGCATAA lcl|KY417151.1_cd...