Simulated dataset of read counts used in the examples

Source: R/data_rcounts.R

Each individuals sample includes 10000 cytosine positions

rcounts

Format

rcounts is a list of GRanges-class objects, each element carrying in their meta-columns the following variables:

mC

methylation level from the reference sample

uC

methylation level from the treatment sample

where the column labeled 'mC' carries the number methylated cytosines and column 'uC' the number of unmethylated cytosines. The list carries 6 elements:

ref

A reference sample to be used for the computation of information divergences with function estimateDivergence.

C1 to C3

GRanges from the control samples.

T1 to T3

GRanges from the treatment samples.